If I wanted to write this without using "the":
Twilight begins, small but distinctly visible. A gloomy sky stares down upon parched roads as storm clouds begin to thunder. Gradually,as daylight wanes away, moonlight crescendoes into existence.
Change the tense, change word orders, use implication, change from "The Moon" and "The Sun" to their effects, "Moonlight", "Daylight". Substitute other words for "the", like "a".
I agree with @towr "The Moon crescendoes into existence" is not good poetry, and "small Twilight" is confusing.
I agree with @wetcircuit as well; look for ways to shorten your writing. "The gloomy sky is staring down at the parched roads" is the wrong tense. "Gloomy skies stare down on parched roads" is both fewer words and less awkward.
Readers don't mind "the" in front of nouns like "the sun", "the moon", "the knife", "the car". It doesn't even mentally register. They are not counting how many times you use words like "and", "the", "a", etc. As long as you use them correctly. If it isn't a verb, noun or adjective, it is just the connective tissue of normal conversation.
But overly wordy sentences dilute the impact of your intent, and eventually make your writing weak. It is kind of like over-explaining, like spending pages describing a landscape.
Try to manipulate your lines, using tense and rearrangement, to keep the verbs, nouns and adjectives, but minimize the connective tissue. Cut back on the wordiness, and your tense problem will vanish on its own.
It will also read faster. Your job as a writer is to assist the reader's imagination, and the more efficiently you do that, the more immersed the reader becomes in the story.